Graphical approach to analyzing DNA sequences | Zendy

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Graphical approach to analyzing DNA sequences

Author(s) -

Liao Bo,

Ding Kequan

Publication year - 2005

Publication title -

journal of computational chemistry

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 0.907

H-Index - 188

eISSN - 1096-987X

pISSN - 0192-8651

DOI - 10.1002/jcc.20287

Subject(s) - sequence (biology) , computer science , graph , representation (politics) , alignment free sequence analysis , theoretical computer science , computational biology , dna sequencing , dna , algorithm , sequence alignment , genetics , biology , peptide sequence , gene , politics , political science , law

Recently, we proposed a 2D graphical representation of DNA sequence [J Comput Chem 25(2004) 1364–1368]. Based on this representation, we outline one approach to search optimal alignment. We also can judge the mutations between bases and an unknown sequence based on its graph and a known sequence's graph. © 2005 Wiley Periodicals, Inc. J Comput Chem 26: 1519–1523, 2005

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