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KIF1A and EDNRB are differentially methylated in primary HNSCC and salivary rinses
Author(s) -
Demokan Semra,
Chang Xiaofei,
Chuang Alice,
Mydlarz Wojciech K.,
Kaur Jatinder,
Huang Peng,
Khan Zubair,
Khan Tanbir,
Ostrow Kimberly L.,
Brait Mariana,
Hoque Mohammad O.,
Liegeois Nanette J.,
Sidransky David,
Koch Wayne,
Califano Joseph A.
Publication year - 2010
Publication title -
international journal of cancer
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 2.475
H-Index - 234
eISSN - 1097-0215
pISSN - 0020-7136
DOI - 10.1002/ijc.25248
Subject(s) - head and neck squamous cell carcinoma , methylation , dna methylation , cancer research , population , saliva , head and neck cancer , gene , biology , chemistry , cancer , medicine , gene expression , genetics , environmental health
Silencing of tumor suppressor genes plays a vital role in head and neck carcinogenesis. In this study, we aimed to evaluate to the utility of aberrant promoter hypermethylation for detection in a panel of 10 genes ( KIF1A, EDNRB, CDH4, TERT, CD44, NISCH, PAK3, VGF, MAL and FKBP4 ) in head and neck squamous cell carcinoma (HNSCC) via a candidate gene approach. We investigated methylation of the gene promoters by bisulfite modification and quantitative methylation‐specific PCR (Q‐MSP) in a preliminary study of a limited cohort of salivary rinses from healthy subjects ( n = 61) and patients with HNSCC ( n = 33). The methylation status of 2 selected genes ( EDNRB and KIF1A ) were then analyzed in 15 normal mucosa samples from a healthy population, 101 HNSCC tumors and the corresponding salivary rinses from 71 out of the 101 HNSCC patients were collected before treatment. The promoter regions of CDH4 , TERT , VGF , MAL , FKBP4 , NISCH and PAK3 were methylated in normal salivary rinses while no methylation of CD44 was observed in either normal salivary rinses or tumor samples. However, KIF1A and EDNRB were methylated in 98 and 97% of primary HNSCC tissues respectively and were only methylated in 2 and 6.6% of normal salivary rinses. In addition, KIF1A and EDNRB were methylated in 38 and 67.6% of salivary rinses from HNSCC patients, respectively. Promoter hypermethylation of KIF1A and EDNRB is a frequent event in primary HNSCC, and these genes are preferentially methylated in salivary rinses from HNSCC patients. KIF1A and EDNRB are potential biomarkers for HNSCC detection.