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Polymorphism in the nuclear excision repair gene ERCC2/XPD : association between an exon 6–exon 10 haplotype and susceptibility to cutaneous basal cell carcinoma
Author(s) -
Lovatt Tracy,
Alldersea Julie,
Lear John T.,
Hoban Paul R.,
Ramachandran Sudarshan,
Fryer Anthony A.,
Smith Andrew G.,
Strange Richard C.
Publication year - 2005
Publication title -
human mutation
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.981
H-Index - 162
eISSN - 1098-1004
pISSN - 1059-7794
DOI - 10.1002/humu.20158
Subject(s) - xeroderma pigmentosum , biology , haplotype , ercc2 , exon , genetics , basal cell carcinoma , single nucleotide polymorphism , odds ratio , nucleotide excision repair , confidence interval , dna repair , microbiology and biotechnology , genotype , medicine , gene , basal cell
Cutaneous basal cell carcinoma (BCC) risk is mediated by interactions between ultraviolet radiation (UVR) and host factors, including DNA repair efficiency. We investigated the association between BCC risk and SNPs in exon 6 (c.466C>A, dbSNP238406:g.C>A; designated C/A 156 ), exon 10 (c.932G>A, dbSNP1799793:g.G>A; designated G/A 312 ), and exon 23 (c.2251A>C, dbSNP13181:g.A>C; designated A/C 751 ) of the nucleotide excision repair gene, XPD ( ERCC2 ; excision repair cross‐complementing repair deficiency, complementation 2 [xeroderma pigmentosum D]). XPD genotype frequencies were not significantly different in 509 cases and 379 controls, although AA 156 (odds ratio [OR]=0.61, 95% confidence interval [CI]=0.37–1.01, P=0.052) and AA 312 (OR=0.65, 95% CI=0.40–1.05, P=0.08) were linked with reduced risk. A 156 –A 312 and A 156 –A 312 –A 751 haplotype frequencies however, were significantly lower in cases than controls (OR=0.12, 95% CI=0.05–0.31, P<0.001; OR=0.10, 95% CI=0.03–0.33, P<0.001). We confirmed the robustness of these findings by showing significant associations of the haplotypes with risk in two randomly selected equal sized groups of cases and controls and, using the false positive report probability (FPRP) approach (FPRP values<0.001 and<0.004, respectively). A 156 –A 312 was similarly associated with reduced risk in subgroups, including cases with no family history of skin cancer, with only BCC on the head/neck, and those with a high rate of increase in BCC numbers. The association was not dependent on gender, age, or extent of UVR exposure. A 156 –A 312 was found in 6.3% of controls and the corresponding risk haplotype, C 156 –G 312 (OR=1.65, 95% CI=1.21–2.26, P=0.002) in 35.4% of controls. We interpret these data as showing that XPD SNP mediate susceptibility to BCC. Hum Mutat 25:353–359, 2005. © 2005 Wiley‐Liss, Inc.