Premium
Intercalating Nucleic Acids with Insertion of 5‐[(Pyren‐1‐yl)methylidene]hydantoin‐Substituted Butane‐1,2‐diol
Author(s) -
Aly Youssef Lotfy,
Wamberg Michael,
Pedersen Erik B.
Publication year - 2005
Publication title -
helvetica chimica acta
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.74
H-Index - 82
eISSN - 1522-2675
pISSN - 0018-019X
DOI - 10.1002/hlca.200590253
Subject(s) - chemistry , hydantoin , phosphoramidite , alkylation , dna , oligomer , yield (engineering) , nucleobase , nucleic acid , thiophosphate , stereochemistry , intercalation (chemistry) , oligonucleotide , organic chemistry , biochemistry , catalysis , materials science , metallurgy
Isopropylidene‐protected ( S )‐4‐ O ‐(methylsulfonyl)butane‐1,2,4‐triol was used for alkylation of 5‐[(pyren‐3‐yl)methylidene]hydantoin to give the N 3 ‐monoalkylated product 4 in 29% yield together with a dialkylated product 5 in 12% yield. After deprotection, compound 4 was transformed into a dimethoxytrityl (DMT)‐protected phosphoramidite building block 9 for standard DNA synthesis. When inserted as a bulge in the triplex‐forming oligomer, compound 6 stabilizes a DNA triplex, whereas the corresponding DNA/DNA and DNA/RNA duplexes are slightly destabilized. For the triplex, fluorescence enhancement was observed at 500 nm.