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Myxovirus‐1 and protein kinase haplotypes and fibrosis in chronic hepatitis C virus
Author(s) -
Yee Leland J.,
Tang YongMing,
Kleiner David E.,
Wang Dai,
Im KyungAh,
Wahed Abdus,
Tong Xiaomei,
Rhodes Shan,
Su Xiaowen,
Whelan R. Margaret,
Fontana Robert J.,
Ghany Marc G.,
Borg Brian,
Liang T. Jake,
Yang Huiying
Publication year - 2007
Publication title -
hepatology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 5.488
H-Index - 361
eISSN - 1527-3350
pISSN - 0270-9139
DOI - 10.1002/hep.21636
Subject(s) - haplotype , medicine , genotype , cohort , confounding , gastroenterology , hepatitis c virus , protein kinase r , hepatitis c , immunology , biology , virus , gene , genetics , cancer , cell cycle , cyclin dependent kinase 2
Candidate genes, including myxovirus resistance‐1 (Mx1), protein kinase (PKR), transforming growth factor‐ β 1 (TGF‐β), interleukin‐10 (IL‐10), and interferon‐gamma (IFN‐γ), were evaluated for associations with liver fibrosis in 374 treatment‐naive patients with genotype‐1 chronic HCV infection [194 Caucasian Americans (CAs) and 180 African Americans (AAs)], using a genetic haplotype approach. Among the 18 haplotypes that occurred with a frequency ≥5% in the cohort overall, the Mx1‐(‐123C)‐(+6886A)‐(+19820G(379V))‐(+38645T) (abbreviated Mx1‐CAGT), and PKR‐(+110T)‐(+7949G)‐(+13846A)‐(+22937T)‐(+40342T) (abbreviated PKR‐TGATT) haplotypes were independently associated with less severe hepatic fibrosis (Ishak ≥ 3 versus <3). These associations persisted after adjustment for potential confounders such as alcohol use, sex, age (which is strongly correlated with the estimated duration of HCV infection [Spearman's correlation coefficient ( r s ) = 0.6)], and race (for Mx1‐CAGT : OR = 0.33; 95% CI: 0.16‐0.68; P = 0.0027; and for PKR‐TGATT : OR = 0.56; 95% CI: 0.32‐0.98; P = 0.0405). Population structure was evaluated using the structured association method using data from 161 ancestry‐informative markers and did not affect our findings. We used an independent cohort of 34 AA and 160 CA in an attempt to validate our findings, although notable differences were found in the characteristics of the two patient groups. Although we observed a similar protective trend for the Mx1‐CAGT haplotype in the validation set, the association was not statistically significant. Conclusion: In addition to other factors, polymorphisms in cytokine genes may play a role in the progression of HCV‐related fibrosis; however, further studies are needed. (H EPATOLOGY 2007.)