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Developmental trajectory of oligodendrocyte progenitor cells in the human brain revealed by single cell RNA sequencing
Author(s) -
Perlman Kelly,
Couturier Charles P.,
Yaqubi Moein,
Tanti Arnaud,
Cui QiaoLing,
Pernin Florian,
Stratton Jo Anne,
Ragoussis Jiannis,
Healy Luke,
Petrecca Kevin,
Dudley Roy,
Srour Myriam,
Hall Jeffrey A.,
Kennedy Timothy E.,
Mechawar Naguib,
Antel Jack P.
Publication year - 2020
Publication title -
glia
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 2.954
H-Index - 164
eISSN - 1098-1136
pISSN - 0894-1491
DOI - 10.1002/glia.23777
Subject(s) - biology , transcriptome , oligodendrocyte , progenitor cell , gene expression , stem cell , rna , cell , neural stem cell , microbiology and biotechnology , gene , genetics , myelin , central nervous system , neuroscience
Characterizing the developmental trajectory of oligodendrocyte progenitor cells (OPC) is of great interest given the importance of these cells in the remyelination process. However, studies of human OPC development remain limited by the availability of whole cell samples and material that encompasses a wide age range, including time of peak myelination. In this study, we apply single cell RNA sequencing to viable whole cells across the age span and link transcriptomic signatures of oligodendrocyte‐lineage cells with stage‐specific functional properties. Cells were isolated from surgical tissue samples of second‐trimester fetal, 2‐year‐old pediatric, 13‐year‐old adolescent, and adult donors by mechanical and enzymatic digestion, followed by percoll gradient centrifugation. Gene expression was analyzed using droplet‐based RNA sequencing (10X Chromium). Louvain clustering analysis identified three distinct cellular subpopulations based on 5,613 genes, comprised of an early OPC (e‐OPC) group, a late OPC group (l‐OPC), and a mature OL (MOL) group. Gene ontology terms enriched for e‐OPCs included cell cycle and development, for l‐OPCs included extracellular matrix and cell adhesion, and for MOLs included myelination and cytoskeleton. The e‐OPCs were mostly confined to the premyelinating fetal group, and the l‐OPCs were most highly represented in the pediatric age group, corresponding to the peak age of myelination. Cells expressing a signature characteristic of l‐OPCs were identified in the adult brain in situ using RNAScope. These findings highlight the transcriptomic variability in OL‐lineage cells before, during, and after peak myelination and contribute to identifying novel pathways required to achieve remyelination.