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Increasing genomic instability during premalignant neoplastic progression revealed through high resolution array‐CGH
Author(s) -
Lai Lisa A.,
Paulson Thomas G.,
Li Xiaohong,
Sanchez Carissa A.,
Maley Carlo,
Odze Robert D.,
Reid Brian J.,
Rabinovitch Peter S.
Publication year - 2007
Publication title -
genes, chromosomes and cancer
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.754
H-Index - 119
eISSN - 1098-2264
pISSN - 1045-2257
DOI - 10.1002/gcc.20435
Subject(s) - cdkn2a , chromosome instability , genome instability , comparative genomic hybridization , aneuploidy , biology , loss of heterozygosity , copy number variation , somatic evolution in cancer , chromothripsis , cancer research , tumor progression , microsatellite instability , cancer , genetics , chromosome , gene , genome , dna , dna damage , microsatellite , allele
Chromosomal instability is regarded as an underlying mechanism of neoplastic progression, integral to the clonal selection and evolution that leads to cancer. We evaluated chromosomal instability in premalignant Barrett's esophagus tissue using high resolution Affymetrix mapping 100K SNP arrays as patients progressed through three molecular stages of disease— CDKN2A LOH only, CDKN2A LOH / TP53 LOH , and CDKN2A LOH / TP53 LOH with aneuploidy. Within individuals over time, we observed increases in both numbers and sizes of regions of LOH or copy number change. In the earliest CDKN2A LOH only samples, we detected few regions with both copy change and LOH, whereas copy loss and LOH were highly correlated in more advanced samples. These data indicate that genomic instability increases in severity and changes character during neoplastic progression. In addition, distinct patterns of clonal evolution could be discerned within a segment of Barrett's esophagus. Overall, this study illustrates that pre‐malignant disease can be associated with extensive instability and clonal dynamics that evolve from an initial stage characterized by small recombination‐based alterations to one with larger copy change events likely associated with mitotic instability. © 2007 Wiley‐Liss, Inc.