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Z ‐scores unite pairwise indices of ecological similarity and association for binary data
Author(s) -
Keil Petr
Publication year - 2019
Publication title -
ecosphere
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.255
H-Index - 57
ISSN - 2150-8925
DOI - 10.1002/ecs2.2933
Subject(s) - jaccard index , statistics , contingency table , pairwise comparison , mathematics , similarity (geometry) , null model , pooling , association (psychology) , matching (statistics) , ecology , biology , computer science , artificial intelligence , combinatorics , psychology , image (mathematics) , psychotherapist , cluster analysis
Pairwise ecological resemblance, which includes compositional similarity between sites (beta diversity), or associations between species (co‐occurrence), can be measured by >70 indices. Classical examples for presence–absence data are Jaccard index or C ‐score. These can be expressed using contingency table matching components a , b , c , and d —the joint presences, presences at only one site/species, and joint absences. Using simulations of point patterns for two species with known magnitude of association, I demonstrate that most of the indices converge to a similar value and they describe the simulated association almost identically, as long as they are calculated as a Z ‐score, that is, as deviation of the index from a null expectation. Further, I show that Z ‐scores estimate resemblance on average better than raw forms of the indices, particularly in the face of confounding effects of spatial scale and conspecific aggregation. Finally, I show that any single of the matching components, when expressed as Z ‐score, can be used as an index that performs as good as the classical indices; this also includes joint absences. All this simplifies selection of the right resemblance index, it underscores the advantage of expressing resemblance as deviation from a null expectation, and it revives the potential of joint absences as a meaningful ecological quantity.

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