Open AccessTaxonome: a software package for linking biological species data
Author(s) -
Kluyver Thomas A.,
Osborne Colin P.
Publication year - 2013
Publication title -
ecology and evolution
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.17
H-Index - 63
ISSN - 2045-7758
DOI - 10.1002/ece3.529
Subject(s) - python (programming language) , computer science , software , matching (statistics) , graphical user interface , set (abstract data type) , biological data , interface (matter) , data mining , data science , information retrieval , programming language , bioinformatics , biology , statistics , mathematics , bubble , maximum bubble pressure method , parallel computing
Online databases of biological information offer tremendous potential for evolutionary and ecological discoveries, especially if data are combined in novel ways. However, the different names and varied spellings used for many species present major barriers to linking data. Taxonome is a software tool designed to solve this problem by quickly and reproducibly matching biological names to a given reference set. It is available both as a graphical user interface ( GUI ) for simple interactive use, and as a library for more advanced functionality with programs written in Python. Taxonome also includes functions to standardize distribution information to a well‐defined set of regions, such as the TDWG World Geographical Scheme for Recording Plant Distributions. In combination, these tools will help biologists to rapidly synthesize disparate datasets, and to investigate large‐scale patterns in species traits.