Open AccessA neutral view of the evolving genomic architecture of speciation
Author(s) -
Southcott Laura,
Kronforst Marcus R.
Publication year - 2017
Publication title -
ecology and evolution
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.17
H-Index - 63
ISSN - 2045-7758
DOI - 10.1002/ece3.3190
Subject(s) - allopatric speciation , biology , gene flow , genetic algorithm , evolutionary biology , reproductive isolation , natural selection , ecological speciation , genome , neutral theory of molecular evolution , background selection , local adaptation , parapatric speciation , genomics , genome evolution , adaptation (eye) , selection (genetic algorithm) , genetics , gene , genetic variation , population , demography , artificial intelligence , sociology , computer science , neuroscience
Abstract Analyses of genomewide polymorphism data have begun to shed light on speciation and adaptation. Genome scans to identify regions of the genome that are unusually different between populations or species, possibly due to divergent natural or sexual selection, are widespread in speciation genomics. Theoretical and empirical work suggests that such outlier regions may grow faster than linearly during speciation with gene flow due to a rapid transition between low and high reproductive isolation. We investigate whether this pattern could be attributed to neutral processes by simulating genomes under neutral evolution with varying amounts and timing of gene flow. Under both neutral evolution and divergent selection, simulations with little or no gene flow, or with a long allopatric period after its cessation, resulted in faster than linear growth of the proportion of the genome lying in outlier regions. Without selection, higher recent gene flow erased differentiation; with divergent selection, these same scenarios produced nonlinear growth to a plateau. Our results suggest that, given a history of gene flow, the growth of the divergent genome is informative about selection during divergence, but that in many scenarios, this pattern does not easily distinguish neutral and non‐neutral processes during speciation with gene flow.