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5‐(Piperidin‐4‐yl)‐3‐Hydroxypyrazole: A Novel Scaffold for Probing the Orthosteric γ‐Aminobutyric Acid Type A Receptor Binding Site
Author(s) -
Krall Jacob,
Kongstad Kenneth T.,
Nielsen Birgitte,
Sørensen Troels E.,
Balle Thomas,
Jensen Anders A.,
Frølund Bente
Publication year - 2014
Publication title -
chemmedchem
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.817
H-Index - 100
eISSN - 1860-7187
pISSN - 1860-7179
DOI - 10.1002/cmdc.201402248
Subject(s) - chemistry , stereochemistry , antagonist , binding site , scaffold , receptor , docking (animal) , affinities , biochemistry , computer science , medicine , nursing , database
A series of bioisosteric N 1 ‐ and N 2 ‐substituted 5‐(piperidin‐4‐yl)‐3‐hydroxypyrazole analogues of the partial GABA A R agonists 4‐PIOL and 4‐PHP have been designed, synthesized, and characterized pharmacologically. The unsubstituted 3‐hydroxypyrazole analogue of 4‐PIOL ( 2 a ; IC 50 ∼300 μ M ) is a weak antagonist at the α 1 β 2 γ 2 GABA A R, whereas substituting the N 1 ‐ or N 2 ‐position with alkyl or aryl substituents resulted in antagonists with binding affinities in the high nanomolar to low micromolar range at native rat GABA A Rs. Docking studies using a α 1 β 2 γ 2 GABA A R homology model along with the obtained SAR indicate that the N 1 ‐substituted analogues of 4‐PIOL and 4‐PHP, 2 a – k , and previously reported 3‐substituted 4‐PHP analogues share a common binding mode to the orthosteric binding site in the receptor. Interestingly, the core scaffold of the N 2 ‐substituted analogues of 4‐PIOL and 4‐PHP, 3 b – k , are suggested to flip 180° thereby adapting to the binding pocket and addressing a cavity situated above the core scaffold.