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A Designed Three‐Stranded β‐Sheet in an α/β Hybrid Peptide
Author(s) -
Sonti Rajesh,
Gopi Hosahudya N.,
Muddegowda Umashankara,
Ragothama Srinivasarao,
Balaram Padmanabhan
Publication year - 2013
Publication title -
chemistry – a european journal
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.687
H-Index - 242
eISSN - 1521-3765
pISSN - 0947-6539
DOI - 10.1002/chem.201204327
Subject(s) - antiparallel (mathematics) , chemistry , beta sheet , stacking , amide , peptide , side chain , crystallography , stereochemistry , vicinal , residue (chemistry) , turn (biochemistry) , protein structure , amino acid , organic chemistry , biochemistry , magnetic field , polymer , physics , quantum mechanics
The incorporation of β‐amino acid residues into the antiparallel β‐strand segments of a multi‐stranded β‐sheet peptide is demonstrated for a 19‐residue peptide, Boc‐LV β FV D PGL β FVVL D PGLVL β FVV‐OMe (BBH19). Two centrally positioned D Pro–Gly segments facilitate formation of a stable three‐stranded β‐sheet, in which β‐phenylalanine ( β Phe) residues occur at facing positions 3, 8 and 17. Structure determination in methanol solution is accomplished by using NMR‐derived restraints obtained from NOEs, temperature dependence of amide NH chemical shifts, rates of H/D exchange of amide protons and vicinal coupling constants. The data are consistent with a conformationally well‐defined three‐stranded β‐sheet structure in solution. Cross‐strand interactions between β Phe3/ β Phe17 and β Phe3/Val15 residues define orientations of these side‐chains. The observation of close contact distances between the side‐chains on the N‐ and C‐terminal strands of the three‐stranded β‐sheet provides strong support for the designed structure. Evidence is presented for multiple side‐chain conformations from an analysis of NOE data. An unusual observation of the disappearance of the Gly NH resonances upon prolonged storage in methanol is rationalised on the basis of a slow aggregation step, resulting in stacking of three‐stranded β‐sheet structures, which in turn influences the conformational interconversion between type I′ and type II′ β‐turns at the two D Pro–Gly segments. Experimental evidence for these processes is presented. The decapeptide fragment Boc‐LV β FV D PGL β FVV‐OMe (BBH10), which has been previously characterized as a type I′ β‐turn nucleated hairpin, is shown to favour a type II′ β‐turn conformation in solution, supporting the occurrence of conformational interconversion at the turn segments in these hairpin and sheet structures.

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