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A Constrained Disorder Refinement: “Reinvestigation of “Single‐Crystal X‐ray Structure of 1,3‐Dimethylcyclobutadiene” by M. Shatruk and I. V. Alabugin”
Author(s) -
Legrand YvesMarie,
Dumitrescu Dan,
Gilles Arnaud,
Petit Eddy,
van der Lee Arie,
Barboiu Mihail
Publication year - 2013
Publication title -
chemistry – a european journal
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.687
H-Index - 242
eISSN - 1521-3765
pISSN - 0947-6539
DOI - 10.1002/chem.201203234
Subject(s) - electron density , atom (system on chip) , crystallography , crystal structure , oxygen atom , residual , hydrogen atom , electron , chemistry , materials science , molecule , physics , computer science , quantum mechanics , algorithm , organic chemistry , alkyl , embedded system
Shatruk and Alabugin propose an alternative structural model for the observed electron density that we have attributed to the photochemical formation of 1,3‐dimethylcyclobutadiene in a protective solid crystalline matrix. The main criticism from Shatruk and Alabugin concerns the modeling of the disorder in the calixarene cavity and in particular the neglect of a residual electron density close to the O1 atom. We published ( Chem. Eur. J. 2011 , 17 , 10021) our opinion concerning this “ignored peak” in the Supporting Information of the paper. The current response to the Correspondence demonstrates that Shatruk and Alabugin have over‐modeled our data by assigning a small electron density peak, which is hardly more than the density corresponding to a hydrogen atom, to an under‐occupied oxygen site, using inappropriate refinement contraints.