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Cleavage of an RNA Model Compound by an Arylmercury Complex
Author(s) -
Saleh Lange Yakubu,
Ora Mikko,
Lönnberg Tuomas
Publication year - 2021
Publication title -
chembiochem
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.05
H-Index - 126
eISSN - 1439-7633
pISSN - 1439-4227
DOI - 10.1002/cbic.202000799
Subject(s) - phosphodiester bond , catalysis , cleavage (geology) , oligonucleotide , chemistry , rna , substrate (aquarium) , stereochemistry , dna , organic chemistry , biochemistry , materials science , biology , ecology , fracture (geology) , composite material , gene
A water‐soluble arylmercury complex has been synthesized, and its ability to catalyze the cleavage of the phosphodiester linkage of the RNA model compound adenylyl‐3′,5′‐(2′,3′‐ O ‐methyleneadenosine) has been assessed over a pH range of 3–8.5 and a catalyst concentration range of 0–7 mM. In the presence of 1 mM catalyst, the observed pH–rate profile featured a new pH‐independent region between pH 6 and 7, the catalyzed reaction being as much as eight times faster than the background reaction. At pH 7, the acceleration increased linearly from three‐ to 17‐fold upon increasing the catalyst concentration from 1 to 7 mM. The linear dependence indicates a relatively low affinity of the catalyst for the substrate and, hence, the potential for considerable improvement on tethering to an appropriate targeting group, such as an oligonucleotide.