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Kinase in Motion: Insights into the Dynamic Nature of p38α by High‐Pressure NMR Spectroscopic Studies
Author(s) -
Nielsen Gerd,
Jonker Hendrik R. A.,
Vajpai Navratna,
Grzesiek Stephan,
Schwalbe Harald
Publication year - 2013
Publication title -
chembiochem
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.05
H-Index - 126
eISSN - 1439-7633
pISSN - 1439-4227
DOI - 10.1002/cbic.201300170
Subject(s) - chemistry , nuclear magnetic resonance spectroscopy , kinase , protein kinase a , molecular dynamics , high pressure , biophysics , computational chemistry , biochemistry , stereochemistry , biology , physics , mechanics
Protein kinases are highly dynamic and complex molecules. Here we present high‐pressure and relaxation studies of the activated p38α mitogen‐activated protein kinase (MAPK). p38α plays a central role in inflammatory diseases such as rheumatoid arthritis and is therefore a highly attractive pharmaceutical target. The combination of high pressure and NMR spectroscopy allowed for a detailed per‐residue based assessment of the structural plasticity of p38α and the accessibility of low‐lying excited‐energy conformations throughout the kinase structure. Such information is uniquely accessible through the combination of liquid‐state NMR and high pressure and is of considerable value for the drug discovery process. The interactions of p38α and DFG‐in and DFG‐out ligands were studied under the application of high pressure, and we demonstrate how we can alter kinase dynamics by pressure in a similar way to what has previously only been observed by ligand binding. Pressure is shown to be a mild and efficient tool for manipulation of intermediate‐timescale dynamics.