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Reassessment of the random coil conformation: Vibrational CD study of proline oligopeptides and related polypeptides
Author(s) -
Dukor Rina K.,
Keiderling Timothy A.
Publication year - 1991
Publication title -
biopolymers
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.556
H-Index - 125
eISSN - 1097-0282
pISSN - 0006-3525
DOI - 10.1002/bip.360311409
Subject(s) - polyproline helix , random coil , proline , chemistry , polymer , spectral line , oligopeptide , amino acid , vibrational circular dichroism , circular dichroism , stereochemistry , crystallography , helix (gastropod) , glutamic acid , peptide , organic chemistry , biochemistry , physics , astronomy , snail , biology , ecology
The “random coil” conformational problem is examined by comparison of vibrational CD (VCD) spectra of various polypeptide model systems with that of proline oligomers [(Pro) n ] and poly ( L ‐proline). VCD, ir and uv CD spectra of blocked L ‐proline oligopeptides [(Pro) n , n = 2–12] in different solvents are reported and compared to the spectra of poly ( L ‐proline) II, poly ( L ‐glutamic acid), and unblocked proline oligomers. Based on the chain‐length dependence of the VCD and electronic CD (BCD) spectra of proline oligomers, it is established that VCD spectra are dominated by short‐range interactions. The VCD of random coil model polypeptides is shown to be identical in shape but smaller in magnitude than poly ( L ‐proline) II and of similar magnitude to that of (Pro) n ( n = 3, 4). Based on the spectral evidence, it is concluded that the “random coil” conformation has a large fraction of helical regions, conformationally similar to the left‐handed, 3 1 polyproline II helix, as was previously suggested by Krimm and co‐workers. This conclusion is further supported by studies of effects of salt (CaCl 2 , LiBr, LiClO 4 ), temperature (5–75°C), and pH on the VCD spectra of L ‐proline oligomers, poly ( L ‐proline) II, and poly ( L ‐glutamic acid). These show that, after each of these perturbations, a significant local ordering remains in the oligomers and polymers studied, and that charged polypeptides such as poly ( L ‐glutamic acid) are more flexible than are polyproline or even L ‐proline oligomers.