z-logo
Premium
Synthesis, crystal structure, and molecular conformation of N‐Boc‐ L ‐Phe‐dehydro‐Leu‐ L ‐Val‐OCH 3
Author(s) -
Narula P.,
Patel H. C.,
Singh T. P.,
Chauhan V. S.
Publication year - 1990
Publication title -
biopolymers
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.556
H-Index - 125
eISSN - 1097-0282
pISSN - 0006-3525
DOI - 10.1002/bip.360290606
Subject(s) - chemistry , stereochemistry , crystal structure , crystallography
The peptide N‐Boc‐ L ‐Phe‐dehydro‐Leu‐ L ‐Val‐OCH 3 was synthesized by the usual workup procedure and finally by coupling the N‐Boc‐ L ‐Phe‐dehydro‐Leu‐OH to valine methyl ester. It was crystallized from its solution in methanol–water mixture at 4°C. The crystals belong to the triclinic space group P1 with a = 5.972(5) Å, b = 9.455(6) Å, c = 13.101(6) Å, α = 103.00(4)°, β = 97.14(5)°, γ = 102.86(50)°, V = 690.8(8) Å, Z = 1, dm = 1.179(5) Mg m −3 and dc = 1.177(5) Mg m −3 . The structure was determined by direct methods using SHELXS86. It was refined by block‐diagonal least‐squares procedure to an R value of 0.060 for 1674 observed reflections. The C   2 α –C   2 βdistance of 1.323(9) Å in dehydro‐Leu is an appropriate double bond length. The bond angle C α –C β –C γ in the dehydro‐Leu residue is 129.4(8)°. The peptide backbone torsion angles are θ 1 = −168.6(6)°, ω 0 = 170.0(6)°, ϕ 1 = −44.5(9)°, ψ 1 = 134.5(6)°, ω 1 = 177.3(6)°, ϕ 2 = 54.5(9)°, ψ 2 = 31.1(10)°, ω 2 = 171.7(6)°, ϕ 3 = 51.9(8)°, ψ   3 T= 139.0(6)°, θ T = −175.7(6)°. These values show that the backbone adopts a β‐turn II conformation. As a result of β‐turn, an intramolecular hydrogen bond is formed between the oxygen of the i th residue and NH of the ( i + 3)th residue at a distance of 3.134(6) Å. The Boc group has a trans – trans conformation. The side‐chain torsion angles of the Phe residue are χ 1 = 171.6(6)°, χ   1 2,1= −102.1(9)°, and χ   1 2,2= 78.6(10)°. The side‐chain conformational angles of dehydro‐Leu residue are χ 2 = 2.7(13)°, χ   2 2,1= −107.3(11)°, and χ   2 2,2= 131.3(10)°. The torsion angles χ   3 1,1and χ   3 1,2that define the conformation of the valyl side chain are −166.16(6)° and 69.1(9)°, respectively. The crystal structure is stabilized by hydrogen bonds along the a and b axes, while the van der Waals forces are the stabilizing interactions in the c direction.

This content is not available in your region!

Continue researching here.

Having issues? You can contact us here
Accelerating Research

Address

John Eccles House
Robert Robinson Avenue,
Oxford Science Park, Oxford
OX4 4GP, United Kingdom