Premium
Synthesis, crystal structure, and molecular conformation of peptide N‐Boc‐ L ‐Pro‐dehydro‐Phe‐ L ‐Gly‐OH
Author(s) -
Patel H. C.,
Singh T. P.,
Chauhan V. S.,
Kaur P.
Publication year - 1990
Publication title -
biopolymers
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.556
H-Index - 125
eISSN - 1097-0282
pISSN - 0006-3525
DOI - 10.1002/bip.360290306
Subject(s) - chemistry , intramolecular force , dihedral angle , peptide , hydrogen bond , stereochemistry , monoclinic crystal system , crystal structure , crystallography , pyrrolidine , molecule , biochemistry , organic chemistry
The peptide N‐Boc‐ L ‐Pro‐dehydro‐Phe‐ L ‐Gly‐OH was synthesized by the usual workup procedure and finally coupling the N‐Boc‐ L ‐Pro‐dehydro‐Phe to glycine. The peptide crystallizes in monoclinic space group P2 1 with a = 8.951(4) Å, b = 5.677 (6) Å, c = 21.192(11) Å, β = 96.97(4)°, V = 1069(1) Å 3 , Z = 2, d m = 1.295(5) Mgm −3 , and d c = 1.297(4) Mgm −3 . The structure was determined by direct methods using SHELXS86. The structure was refined by the block‐diagonal least‐squares procedure to an R value of 0.074 for 1002 observed reflections. The C 2 α –C 2 βdistance of 1.33(2) Å is an appropriate double bond length. The angle C 2 α –C 2 β –C 2 γis 133(1)°. The peptide backbone torsion angles are θ 1 = −167(1)°, ω 0 = 179(1)°, ϕ 1 = −48(1)°, ψ 1 = 137(1)°, ω 1 = 175(1)°, ϕ 2 = 65(2)°, ψ 2 = 15(2)°, ω 2 = −179(1)°, and ϕ 3 = −166(1)°. These values show that the Boc group has a trans – trans conformation while the peptide backbone adopts a β‐turn II conformation, which is stablized by an intramolecular hydrogen bond of length of 3.05(1) Å. The structures of dehydro‐Phe containing peptides suggest that the dehydro‐Phe promotes the β‐turn II conformation. The five‐membered pyrrolidine ring of the Pro residue adopts an ideal C γ ‐ exo conformation with torsion angles χ 1 1= −24(1)°, χ 1 2= 34(1)°, χ 1 3= −30(1)°, χ 1 4= 15(1)°, and θ 1 0= 6(1)°. The side chain torsion angles in dehydro‐Phe are χ 2 1= −1(2)°, χ 2 2, 1= −176(1)°, and χ 2 2, 2= 8(2)°. The Plane of C 2 α –C 2 β –C 2 γis rotated with respect to the plane of the phenyl ring at 7(1)°, which indicates that the atoms of the side chain of dehydro‐Phe are essentially coplanar. The molecules form a 2 1 screw axis related hydrogen‐bonded rows along the b axis.