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T emperature‐dependent molecular dynamics study reveals an ionic liquid induced 3 10 ‐ to α‐ helical switch in a neurotoxin
Author(s) -
Sajeevan Karuna Anna,
Roy Durba
Publication year - 2017
Publication title -
peptide science
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.556
H-Index - 125
eISSN - 1097-0282
pISSN - 0006-3525
DOI - 10.1002/bip.23009
Subject(s) - chemistry , ionic liquid , solvation , molecular dynamics , solvation shell , crystallography , solvent , peptide , ionic bonding , thermodynamics , computational chemistry , ion , organic chemistry , biochemistry , physics , catalysis
Thermal melting and recooling of AuIB, a neurotoxic conopeptide and a highly potent nonaddictive pain reliever is investigated thoroughly in water and an ionic liquid (IL) 1‐butyl‐3‐methylimidazolium Chloride, [Im 41 ][Cl] by classical molecular dynamics simulations. Structural evolution of AuIB in water and the IL is observed at different temperatures between 305 and 400 K, to explore how highly viscous ionic solvents affect the peptide structure as compared to conventional solvent water. At 305 K, unlike water, the coercive effect of IL frustrates AuIB secondary structural motifs significantly. As the temperature is raised, a very interesting IL induced conformational transition from 3 10 ‐ to α ‐helix is noticed in the peptide, presumably triggered by a significant restructuring of the peptide H‐bond network. The backbone length distributions of the peptide indicate that the IL induced conformational switching is accompanied by a reduction of the axial rise of the helical region, encompassing the residues Pro‐6 to Ala‐10. Further, we estimated the void space available to the peptide for its structural relaxation within the first solvation shell of ∼5 Å in water as well as in IL. A temperature increase by 100 K, opens up an estimated void volume of ∼70 Å 3 , equivalent to the volume of approximately six water molecules, around the peptide in IL. Cooling simulations of AuIB point to the crucial interplay between thermodynamically favored AuIB conformers and their kinetic control. This study provides a comprehensive understanding of the ionic solvation of biomolecules reinforcing previous experimental findings.