Unzipping DNA from the condensed globule state—Effects of unraveling

We have studied theoretically the unzipping of a double‐stranded DNA from a condensed globule state by an external force. At constant force, we found that the double‐stranded DNA unzips an at critical force F c and the number of unzipped monomers M goes as M ∼ ( F c − F ) −3 , for both the homogeneous and heterogeneous double‐stranded DNA sequence. This is different from the case of unzipping from an extended coil state in which the number of unzipped monomers M goes as M ∼ ( F c − F ) −χ , where the exponent χ is either 1 or 2 depending on whether the double‐stranded DNA sequence is homogeneous or heterogeneous, respectively. In the case of unzipping at constant extension, we found that for a double‐stranded DNA with a very large number N of base pairs, the force remains almost constant as a function of the extension, before the unraveling transition, at which the force drops abruptly to zero. Right at the unraveling transition, the number of base pairs remaining in the condensed globule state is still very large and goes as N 3/4 , in agreement with theoretical predictions of the unraveling transition of polymers stretched by an external force. © 2005 Wiley Periodicals, Inc. Biopolymers 79: 287–291, 2005 This article was originally published online as an accepted preprint. The “Published Online” date corresponds to the preprint version. You can request a copy of the preprint by emailing the Biopolymers editorial office at biopolymers@wiley.com