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Vibrational infrared conformational studies of model peptides representing the semicrystalline domains of Bombyx mori silk fibroin
Author(s) -
Taddei Paola,
Monti Patrizia
Publication year - 2005
Publication title -
biopolymers
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.556
H-Index - 125
eISSN - 1097-0282
pISSN - 0006-3525
DOI - 10.1002/bip.20275
Subject(s) - fibroin , silk , bombyx mori , chemistry , infrared spectroscopy , crystallinity , crystallography , residue (chemistry) , peptide , stereochemistry , materials science , organic chemistry , biochemistry , composite material , gene
The structural organization of Bombyx mori silk fibroin was investigated by infrared (IR) spectroscopy. To this aim, (AG) 15 and other model peptides of varying chain length, containing tyrosine (Y), valine (V), and serine (S) in the basic (AG) n sequence were synthesized by the solid phase method and their spectroscopic properties were determined. Both the position and the relative content of Y, V, and S residues in the (AG) n model system appeared critical in determining the preferred conformation, i.e., silk I, silk II, and unordered structures. Curve fitting analysis in the amide I range showed that the model peptides with prevailing silk II structure displayed different β‐sheet content, which was dependent on the degree of interruption of the (AG) n sequence. In this regard, the bands at about 1000 and 980 cm −1 , specifically assigned to the AG sequence of the B. mori silk fibroin chain, were identified as marker of the degree of interruption of the (AG) n sequence. A stable silk I structure was observed only when the Y residue was located near the chain terminus, while a silk I → silk II conformational transition occurred when it was positioned in the central region of the peptide. Analysis of the second‐derivative spectra in the amide I range allowed us to identify a band at 1639 cm −1 (4 → 1 hydrogen‐bonded type II β‐turns), which is characteristic of the silk I conformation. © 2005 Wiley Periodicals, Inc. Biopolymers 78: 249–258, 2005