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Comparisons between oriented film and solution tertiary structure of various nucleic acids
Author(s) -
Priore Douglas R. C.,
Allen Fritz S.
Publication year - 1979
Publication title -
biopolymers
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.556
H-Index - 125
eISSN - 1097-0282
pISSN - 0006-3525
DOI - 10.1002/bip.1979.360180717
Subject(s) - linear dichroism , chemistry , nucleic acid , dichroism , electric field , dipole , absorption (acoustics) , spectral line , signal (programming language) , rotation (mathematics) , perpendicular , absorption spectroscopy , circular dichroism , analytical chemistry (journal) , molecular physics , crystallography , optics , organic chemistry , physics , geometry , biochemistry , programming language , mathematics , quantum mechanics , astronomy , computer science
We have considered whether or not the tertiary structure of a biomolecule is the same in a crystal (or an oriented film) as it is in solution. A methodology has been developed for comparing polarized absorption spectra obtained from a solid‐state sample with those obtained from an oriented solute to further resolve this question. An electric dichroism instrument built in our laboratory was used to measure the solution dichroism signal which, along with the ordinary solution uv absorption spectra, yields polarized absorption spectra in the directions parallel and perpendicular to the applied electric field. These were then compared to polarized absorption data from oriented films of nucleic acids to determine whether the two sets of data could be rotated into coincidence. This rotation was accomplished using a computer program based on a nonlinear programming method. Four nucleic acids were studied and the film and solution data for three of these were found to be equivalent, requiring rotation through an angle of 3°−20°, depending on film humidity, to bring them into coincidence. For the fourth sample we were unable, perhaps because of signal‐to‐noise ratio limitations, to find a correlation. Flow dichroism and electric dichroism data were also found to be quite similar. Thus it is clear that the induced dipole moment is along the helical axis and that the physical, hydrodynamical, and electrical axes of the nucleic acid molecules are equivalent.