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Light scattering during the hysteresis effect in poly(A)·2poly(U)
Author(s) -
Siano Donald B.
Publication year - 1978
Publication title -
biopolymers
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.556
H-Index - 125
eISSN - 1097-0282
pISSN - 0006-3525
DOI - 10.1002/bip.1978.360171211
Subject(s) - chemistry , radius of gyration , titration , aqueous solution , scattering , analytical chemistry (journal) , molecule , polymer , hydrodynamic radius , root mean square , titration curve , radius , crystallography , chromatography , optics , organic chemistry , physics , computer security , computer science , micelle , electrical engineering , engineering
Light‐scattering studies on buffered aqueous solutions of the triple‐stranded polyribonucleic acid poly(A)·2poly(U) were carried out at neutral pH and during titration. At pH 7.1 and 22°C, a sample of commercially available polymer in 0.005 M phosphate buffer gave a Zimm plot which yielded values for the weight‐average molecular weight, M w , of 874,000 ± 1800 g/mol, a root‐mean‐square radius, ρ of 930 ± 22 Å, and a second viral coefficient of 0.51 ± 0.05 × 10 −3 cm 3 g −1 mol. The light‐scattering data were also analyzed by serval linear and nonlinear least‐squares programs which were devised to determine the model (e.g., rod, coil, or zigzag) which could best describe the shape of the molecule. It was found that a rodlike model, perhaps with a few bends, was in best overall agreement with the data. The assumption that the molecule is a thin rod leads to a value for the linear density of 206 g mol −1 Å −1 and a translation of 3.3 Å per residue. These values are also in close agreement with those expected for a triple‐stranded, thin, base‐stacked molecule. During titration from neutral pH with 0.1 M HCl, the observed apparent molecular weight slowly increased until at about pH 3.5 a sudden, large increase (about 30‐fold) occurred. The root‐mean‐square radius, on the other hand, after an initial small decrease (of about 25%), also exhibited a large increase (about 4‐fold). Upon back titration with 0.1 M NaOH, the molecular parameters did not retrace the original path, but instead exhibited hysteresis—the M w and ρ z are both larger on the basic branch than on the acid branch at a corresponding pH. A plot of long ρ z against log( M w ) during the interval in which the high‐moelcular‐weight form was present (below pH 3.5 on the acid branch, and on the basic branch) gave a straight line with a slope of ⅓. This suggests that the aggregates were composed of some tens of rather open radom coils, presumably of poly(A)·poly(A), and that the hysteresis may be caused under conditions by the metastability of the entangled coils.