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Theoretical evaluation of polytripeptide collagen models
Author(s) -
Hopfinger A. J.,
Walton A. G.
Publication year - 1970
Publication title -
biopolymers
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.556
H-Index - 125
eISSN - 1097-0282
pISSN - 0006-3525
DOI - 10.1002/bip.1970.360090104
Subject(s) - intramolecular force , ramachandran plot , chemistry , triple helix , proline , helix (gastropod) , collagen helix , polyproline helix , sequence (biology) , hydrogen bond , crystallography , stereochemistry , molecule , peptide , protein structure , amino acid , biochemistry , ecology , organic chemistry , snail , biology
The influence of inserting certain residues (X) into a polytripeptide sequence conformed into a poly‐ L ‐proline II helix is examined theoretically. It is found that for sequences such as ‐Gly‐Pro‐X‐ and ‐Gly‐X‐Pro‐, the introduction of glycyl, L ‐alanyl or L ‐seryl residues in the X position destabilizes the helix so that it is no longer the most stable intramolecular form. On the other hand, L ‐prolyl and L ‐hydroxyprolyl residues cause the PP II helix to be most stable. Of the many stable intramolecular forms, the majority will not pack efficiently to form fiber or solid‐state structures. The Rich‐Crick and Ramachandran collagen model structures were examined in terms of a Gly‐Pro‐Ala sequence, the Ramachandran, one‐hydrogen‐bond structure, being the most stable. However, another triple‐strand structure for (Gly‐Pro‐Ala) n , is much more energetically favorable. Hence, it may be concluded that none of the aforementioned is an entirely satisfactory collagen model. The new triple helix conformation proposed by Traub, Yonath, and Segal for (Gly‐Pro‐Pro) is found to give a more favorable intramolecular conformation for (Gly‐Pro‐Ala) n than those derived from other collagen models. It is concluded that the collagen molecule derives its stability from interchain interactions in proline‐sparse regions and intrachain stability in proline‐rich regions.