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Recent developments in computational approaches for uncovering genomic homology
Author(s) -
Simillion Cedric,
Vandepoele Klaas,
Van de Peer Yves
Publication year - 2004
Publication title -
bioessays
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 2.175
H-Index - 184
eISSN - 1521-1878
pISSN - 0265-9247
DOI - 10.1002/bies.20127
Subject(s) - homology (biology) , genome , computational biology , biology , gene , genetics
Identifying genomic homology within and between genomes is essential when studying genome evolution. In the past years, different computational techniques have been developed to detect homology even when the actual similarity between homologous segments is low. Depending on the strategy used, these methods search for pairs of chromosomal segments between which either both gene content and order are conserved or gene content only. However, due to fact that, after their divergence, homologous segments can lose a different set of genes, these methods still often fail to detect genomic homology. Recently, more advanced approaches have been developed that can combine gene order and content information of multiple genomic segments. BioEssays 26:1225–1235, 2004. © 2004 Wiley Periodicals, Inc.