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In silico analysis of human Toll‐like receptor 7 ligand binding domain
Author(s) -
Gupta Chhedi Lal,
Akhtar Salman,
Sayyed Uzma,
Pathak Neelam,
Bajpai Preeti
Publication year - 2015
Publication title -
biotechnology and applied biochemistry
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.468
H-Index - 70
eISSN - 1470-8744
pISSN - 0885-4513
DOI - 10.1002/bab.1377
Subject(s) - docking (animal) , in silico , homology modeling , biology , tlr7 , innate immune system , transmembrane protein , computational biology , transmembrane domain , receptor , g protein coupled receptor , ligand (biochemistry) , binding site , molecular model , microbiology and biotechnology , toll like receptor , biochemistry , gene , medicine , nursing , enzyme
Toll‐like receptors recognizing pathogen‐associated molecular patterns are preface actors for innate immunity. Among them TLR7 is a transmembrane protein playing very crucial role in the signaling pathways involved in innate immunity by recognizing viral ssRNA and specific small molecule agonists. The unavailability of experimental 3D structure of this receptor till date hampers the focused exploration of TLR7 interaction with its ligands. However, several proteins possessing high homology domain enabled us to construct a reliable 3D model of hTLR7 ECD, which was employed to generate the homodimer model using protein–protein docking strategy. Further molecular docking studies between developed homodimer model and ligands were performed to explore the most preferred site of hTLR7 ECD interacting with ligands. The comparative analysis of docking energies and protein–ligand interactions of all the ligands revealed resiquimod as the prominent agonist. Furthermore, molecular interactions between protein–ligand complexes suggested LRR15 and LRR16 region of hTLR7 ECD as the most preferential site for ligand binding. The Ser434 and Gly437 of LRR15 region of hTLR7 were found to be conserved with Drosophila Toll protein. The obtained complex model may lead to a better understanding of TLR7 functioning along with its inheritance from invertebrates to mammals.