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β‐Turn Analogues in Model αβ‐Hybrid Peptides: Structural Characterization of Peptides Containing β 2,2 Ac 6 c and β 3,3 Ac 6 c Residues
Author(s) -
Basuroy Krishnayan,
Rajagopal Appavu,
Raghothama Srinivasarao,
Shamala Narayanaswamy,
Balaram Padmanabhan
Publication year - 2012
Publication title -
chemistry – an asian journal
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.18
H-Index - 106
eISSN - 1861-471X
pISSN - 1861-4728
DOI - 10.1002/asia.201200052
Subject(s) - characterization (materials science) , peptide , chemistry , cyclic peptide , stereochemistry , materials science , nanotechnology , biochemistry
The effect of gem ‐dialkyl substituents on the backbone conformations of β‐amino acid residues in peptides has been investigated by using four model peptides: Boc‐Xxx‐β 2,2 Ac 6 c(1‐aminomethylcyclohexanecarboxylic acid)‐NHMe (Xxx=Leu ( 1 ), Phe ( 2 ); Boc= tert ‐butyloxycarbonyl) and Boc‐Xxx‐β 3,3 Ac 6 c(1‐aminocyclohexaneacetic acid)‐NHMe (Xxx=Leu ( 3 ), Phe ( 4 )). Tetrasubstituted carbon atoms restrict the ranges of stereochemically allowed conformations about flanking single bonds. The crystal structure of Boc‐Leu‐β 2,2 Ac 6 c‐NHMe ( 1 ) established a C 11 hydrogen‐bonded turn in the αβ‐hybrid sequence. The observed torsion angles ( α ( ϕ ≈−60°, ψ ≈−30°), β ( ϕ ≈−90°, θ ≈60°, ψ ≈−90°)) corresponded to a C 11 helical turn, which was a backbone‐expanded analogue of the type III β turn in αα sequences. The crystal structure of the peptide Boc‐Phe‐β 3,3 Ac 6 c‐NHMe ( 4 ) established a C 11 hydrogen‐bonded turn with distinctly different backbone torsion angles ( α ( ϕ ≈−60°, ψ ≈120°), β ( ϕ ≈60°, θ ≈60°, ψ ≈−60°)), which corresponded to a backbone‐expanded analogue of the type II β turn observed in αα sequences. In peptide 4 , the two molecules in the asymmetric unit adopted backbone torsion angles of opposite signs. In one of the molecules, the Phe residue adopted an unfavorable backbone conformation, with the energetic penalty being offset by a favorable aromatic interaction between proximal molecules in the crystal. NMR spectroscopy studies provided evidence for the maintenance of folded structures in solution in these αβ‐hybrid sequences.