Open AccessMicrosatellite markers for Anthericum ramosum : Development, characterization, and cross‐species amplification
Author(s) -
Vít Petr,
Krak Karol,
Douda Jan,
Mandák Bohumil
Publication year - 2020
Publication title -
applications in plant sciences
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.64
H-Index - 23
ISSN - 2168-0450
DOI - 10.1002/aps3.11323
Subject(s) - biology , microsatellite , loss of heterozygosity , population , genetics , allele , evolutionary biology , gene , demography , sociology
Premise A set of polymorphic nuclear microsatellite loci was developed and tested for use in population genetic analyses of Anthericum ramosum (Agavaceae) and related species. Methods and Results Sequences of 110 primers were extracted in silico from Illumina MiSeq genome skimming data. The degree of polymorphism of 19 loci was tested in four A . ramosum populations collected in Central and Eastern Europe. The average number of alleles per loci ranged from two to 17, and levels of observed and expected heterozygosity ranged from 0.000 to 1.000 and from 0.100 to 0.900, respectively. Primers were successfully amplified in the closely related species A. liliago (12 loci) and Chlorophytum comosum (six loci), whereas they mostly failed to amplify in the phylogenetically more‐distant species Muscari comosum (three loci) and M . tenuiflorum (no amplification). Conclusions This newly developed set of polymorphic nuclear microsatellite markers will be useful for population genetic investigation of A . ramosum and closely related species.