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Bridging Crystal Engineering and Drug Discovery by Utilizing Intermolecular Interactions and Molecular Shapes in Crystals
Author(s) -
Spackman Peter R.,
Yu LiJuan,
Morton Craig J.,
Parker Michael W.,
Bond Charles S.,
Spackman Mark A.,
Jayatilaka Dylan,
Thomas Sajesh P.
Publication year - 2019
Publication title -
angewandte chemie international edition
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 5.831
H-Index - 550
eISSN - 1521-3773
pISSN - 1433-7851
DOI - 10.1002/anie.201906602
Subject(s) - bridging (networking) , intermolecular force , drug discovery , crystal engineering , materials science , nanotechnology , crystal (programming language) , crystallography , chemical physics , molecule , chemistry , crystal structure , computer science , organic chemistry , supramolecular chemistry , biochemistry , programming language , computer network
Abstract Most structure‐based drug discovery methods utilize crystal structures of receptor proteins. Crystal engineering, on the other hand, utilizes the wealth of chemical information inherent in small‐molecule crystal structures in the Cambridge Structural Database (CSD). We show that the interaction surfaces and shapes of molecules in experimentally determined small‐molecule crystal structures can serve as effective tools in drug discovery. Our description of the shape and interaction propensities of molecules in their crystal structures can be used to screen them for specific binding compatibility with protein targets, as demonstrated through the high‐throughput profiling of around 138 000 small‐molecule structures in the CSD and a series of drug–protein crystal structures. Electron‐density‐based intermolecular boundary surfaces in small‐molecule crystal structures and in target‐protein pockets are utilized to identify potential ligand molecules from the CSD based on 3D shape and intermolecular interaction matching.