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Neural Signal Manager: a collection of classical and innovative tools for multi‐channel spike train analysis
Author(s) -
Novellino Antonio,
Chiappalone Michela,
Maccione Alessandro,
Martinoia Sergio
Publication year - 2009
Publication title -
international journal of adaptive control and signal processing
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.73
H-Index - 66
eISSN - 1099-1115
pISSN - 0890-6327
DOI - 10.1002/acs.1076
Subject(s) - computer science , spike (software development) , histogram , software , spike train , neural engineering , local field potential , signal processing , artificial neural network , automation , pattern recognition (psychology) , artificial intelligence , data mining , computer hardware , neuroscience , engineering , mechanical engineering , software engineering , digital signal processing , image (mathematics) , biology , programming language
Recent developments in the neuroengineering field and the widespread use of the micro electrode arrays (MEAs) for electrophysiological investigations made available new approaches for studying the dynamics of dissociated neuronal networks as well as acute/organotypic slices maintained ex vivo . Importantly, the extraction of relevant parameters from these neural populations is likely to involve long‐term measurements, lasting from a few hours to entire days. The processing of huge amounts of electrophysiological data, in terms of computational time and automation of the procedures, is actually one of the major bottlenecks for both in vivo and in vitro recordings. In this paper we present a collection of algorithms implemented within a new software package, named the Neural Signal Manager (NSM), aimed at analyzing a huge quantity of data recorded by means of MEAs in a fast and efficient way. The NSM offers different approaches for both spike and burst analysis, and integrates state‐of‐the‐art statistical algorithms, such as the inter‐spike interval histogram or the post stimulus time histogram, with some recent ones, such as the burst detection and its related statistics. In order to show the potentialities of the software, the application of the developed algorithms to a set of spontaneous activity recordings from dissociated cultures at different ages is presented in the Results section. Copyright © 2008 John Wiley & Sons, Ltd.