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Construction of a mouse blastocyst cDNA library by PCR amplification from total RNA
Author(s) -
Corrick Catherine M.,
Silvestro Mary J.,
Lahoud Mireille H.,
Allen Greg J.,
Tymms Martin J.,
Kola Ismail
Publication year - 1996
Publication title -
molecular reproduction and development
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.745
H-Index - 105
eISSN - 1098-2795
pISSN - 1040-452X
DOI - 10.1002/(sici)1098-2795(199601)43:1<7::aid-mrd2>3.0.co;2-w
Subject(s) - biology , complementary dna , cdna library , microbiology and biotechnology , blastocyst , rna , genomic library , gene , cloning (programming) , rapid amplification of cdna ends , reverse transcriptase , library , dna , embryo , polymerase chain reaction , genetics , molecular cloning , embryogenesis , peptide sequence , computer science , programming language , 16s ribosomal rna
Studies of the development and differentiation of early mammalian embryos have been severely limited by the paucity of material. Such studies have been largely restricted to the examination of abundant genes/proteins or to developmental expression studies of known genes for which DNA sequence data are available, allowing the use of reverse transcription and polymerase chain reaction amplification (RT‐PCR). To eliminate the need for hundreds or thousands of oocytes or embryos in the construction of representative cDNA libraries, we describe a technique for generating and cloning cDNA using small caesium chloride gradient centrifugation to isolate total RNA from oocytes or embryos, followed by RT‐PCR of mRNA from this total RNA. Total RNA was isolated from 70 mouse blastocysts. A portion of the cDNA generated (equivalent to seven blastocysts) was cloned, yielding a mouse blastocyst cDNA library of 1 million clones. We show that the library is representative in that it contains β‐actin, intracisternal A‐type particles, tissue plasminogen activator, and B1 and B2 repetitive elements in frequencies comparable with published data from conventionally constructed libraries and estimates of mRNA abundance from expression studies. Furthermore, DNA sequencing of 22 clones chosen at random and compared with DNA sequence databases shows that approximately half are novel sequences. These data demonstrate that representative cDNA libraries can be constructed in situations where cell numbers are limiting and will facilitate the isolation of novel and interesting clones. © 1996 Wiley‐Liss, Inc.