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Structure modelling and site‐directed mutagenesis of the rat aromatic L‐amino acid pyridoxal 5´‐phosphate‐dependent decarboxylase: A functional study
Author(s) -
Poupon Anne,
Jebai Fatmé,
Labesse Gilles,
Gros François,
Thibault Jean,
Mor JeanPaul,
Krieger Monique
Publication year - 1999
Publication title -
proteins: structure, function, and bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.699
H-Index - 191
eISSN - 1097-0134
pISSN - 0887-3585
DOI - 10.1002/(sici)1097-0134(19991101)37:2<191::aid-prot5>3.0.co;2-4
Subject(s) - aromatic l amino acid decarboxylase , biochemistry , enzyme , mutagenesis , biology , site directed mutagenesis , pyridoxal , amino acid , mutant , peptide sequence , pyridoxal phosphate , homology modeling , cofactor , gene
The pyridoxal‐5´‐phosphate‐dependent enzymes (B 6 enzymes) are grouped into three main families named α, β, and γ. Proteins in the α and γ families share the same fold and might be distantly related, while those in the β family exhibit specific structural features. The rat aromatic L‐amino acid decarboxylase (AADC; EC(4.1.1.28)) catalyzes the synthesis of two important neurotransmitters: dopamine and serotonin. It binds the cofactor pyridoxal‐5`‐phosphate and belongs to the α family. Despite the low level of sequence identity (approximately 10%) shared by the rat AADC and the sequences of the enzymes belonging to the B 6 enzymes family, including the known three‐dimensional structures, a multiple sequence alignment was deduced. A model was built using segments belonging to seven of the eleven known structures. By homology, and based on knowledge of the biochemistry of the aspartate aminotransferase, structurally and functionally important residues were identified in the rat AADC. Site‐directed mutagenesis of the conserved residues D271, T246, and C311 was carried out in order to confirm our predictions and highlight their functional role. Mutation of D271A and D271N resulted in complete loss of enzyme activity, while the D271E mutant exhibited 2% of the wild‐type activity. Substitution of T246A resulted in 5% of the wild‐type activity while the C311A mutant conserved 42% of the wild‐type activity. A functional model of the AADC is discussed in view of the structural model and the complementary mutagenesis and labelling studies. Proteins 1999;37:191–203. ©1999 Wiley‐Liss, Inc.