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The native state of apomyoglobin described by proton NMR spectroscopy: The A‐B‐G‐H interface of wild‐type sperm whale apomyoglobin
Author(s) -
Lecomte Juliette T. J.,
Kao YungHsiang,
Cocco Melanie J.
Publication year - 1996
Publication title -
proteins: structure, function, and bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.699
H-Index - 191
eISSN - 1097-0134
pISSN - 0887-3585
DOI - 10.1002/(sici)1097-0134(199607)25:3<267::aid-prot1>3.0.co;2-d
Subject(s) - sperm whale , chemistry , crystallography , proton , myoglobin , whale , spectroscopy , biology , biochemistry , physics , ecology , quantum mechanics
Proton nuclear magnetic resonance spectroscopy was applied to sperm whale apomyoglobin to describe the conformation adopted by the protein under native conditions. The study focused on the A‐B‐G‐H interface, a region known to form a compact subdomain in the apoprotein (Hughson and Baldwin, Biochemistry 28:4415–4422, 1989). Two histidine residues located in this subdomain, His24 and His119, interact and are thought to play a role in the acid denaturation process (Barrick et al., J. Mol. Biol. 237:588–601, 1994). A stable double mutant at these positions (His24Va1/His119Phe sperm whale apomyoglobin) was compared with wild‐type apomyoglobin. The amino acid replacements result in chemical shift perturbations near the mutations, in particular in the AB interhelical region, and in a deceleration of backbone amide hydrogen exchange in the B helix from position 27 to position 33. The double mutant data were used to expand and confirm the wild‐type spectral analysis. Signals from the D helix were identified that demonstrate the formation of holoprotein‐like structure. The assigned wild‐type nuclear Overhauser effects, although in small number, were sufficient to construct a model of the compact subdomain of the apoprotein. This was achieved by using the structure of the holoprotein and restraining it with the geometrical information on the apoprotein in a simulated annealing procedure. The experimental restraints define a low‐resolution model of the A‐B‐G‐H interface in apomyoglobin. © 1996 Wiley‐Liss, Inc.