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Towards meeting the paracelsus challenge: The design, synthesis, and characterization of paracelsin‐43, an α‐helical protein with over 50% sequence identity to an all‐β protein
Author(s) -
Jones David T.,
Moody Claire M.,
Uppenbrink Julia,
Viles John H.,
Doyle Paul M.,
Harris C. John,
Pearl Laurence H.,
Sadler Peter J.,
Thornton Janet M.
Publication year - 1996
Publication title -
proteins: structure, function, and bioinformatics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.699
H-Index - 191
eISSN - 1097-0134
pISSN - 0887-3585
DOI - 10.1002/(sici)1097-0134(199604)24:4<502::aid-prot9>3.0.co;2-f
Subject(s) - sequence (biology) , protein design , protein folding , circular dichroism , peptide sequence , protein sequencing , protein secondary structure , crystallography , protein structure , protein engineering , chemistry , computational biology , biology , biochemistry , gene , enzyme
In response to the Paracelsus Challenge (Rose and Creamer, Proteins, 19:1–3, 1994), we present here the design, synthesis, and characterization of a helical protein, whose sequence is 50% identical to that of an all‐β protein. The new sequence was derived by applying an inverse protein folding approach, in which the sequence was optimized to “fit” the new helical structure, but constrained to retain 50% of the original amino acid residues. The program utilizes a genetic algorithm to optimize the sequence, together with empirical potentials of mean force to evaluate the sequence‐structure compatibility. Although the designed sequence has little ordered (secondary) structure in water, circular dichroism and nuclear magnetic resonance data show clear evidence for significant helical content in water/ethylene glycol and in water/methanol mixtures at low temperatures, as well as melting behavior indicative of cooperative folding. We believe that this represents a significant step toward meeting the Paracelsus Challenge.