290 metagenome-assembled genomes from the Mediterranean Sea: a resource for marine microbiology
Author(s) -
Benjamin Tully,
Rohan Sachdeva,
Elaina Graham,
John F. Heidelberg
Publication year - 2017
Publication title -
peerj
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.927
H-Index - 70
ISSN - 2167-8359
DOI - 10.7717/peerj.3558
Subject(s) - metagenomics , mediterranean sea , genome , biology , resource (disambiguation) , mediterranean climate , computational biology , geography , evolutionary biology , ecology , computer science , genetics , gene , computer network
The Tara Oceans Expedition has provided large, publicly-accessible microbial metagenomic datasets from a circumnavigation of the globe. Utilizing several size fractions from the samples originating in the Mediterranean Sea, we have used current assembly and binning techniques to reconstruct 290 putative draft metagenome-assembled bacterial and archaeal genomes, with an estimated completion of ≥50%, and an additional 2,786 bins, with estimated completion of 0–50%. We have submitted our results, including initial taxonomic and phylogenetic assignments, for the putative draft genomes to open-access repositories for the scientific community to use in ongoing research.
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