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Development of PCR method for fast detection of Ophiostoma floccosum in wood chips
Author(s) -
Hong Yun Yeo,
Yeon Suh Dong,
Yeol Son Seung,
Hwan Kim Seong
Publication year - 2013
Publication title -
african journal of microbiology research
Language(s) - English
Resource type - Journals
ISSN - 1996-0808
DOI - 10.5897/ajmr2013.5556
Subject(s) - epidermophyton floccosum , ophiostoma , genomic dna , sanger sequencing , polymerase chain reaction , chemistry , microbiology and biotechnology , biology , dna , gene , dna sequencing , botany , fungus , biochemistry , antifungal , trichophyton rubrum
Ophiostoma floccosum is one of blue stain fungi that cause cosmetic damage in softwood. To develop a molecular maker for the detection of O. floccosum, we designed Oflo1 and Oflo2 primers based on the β-tubulin gene. PCR assay with eleven isolates ofO. floccosum and nine other blue stain and discoloring fungal species (moulds) proved that the designed primers specifically amplified a 333 bp sized DNA band only from genomic DNA of O. floccosum isolates. Together with microwave heating extraction of spore DNA, we could detect O. floccosum within 2 h on artificially inoculated wood chip. We believed that the developed PCR method will be useful where detection of target species such as O. floccosum is required.   Key words: Ophiostoma floccosum, Species-specific primer, β-tubulin gene.

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