Aphanomyces frigidophilus, fungus-like organisms isolated from water of springs in Białystok, Poland
Author(s) -
Kiziewicz Bożena,
Javier DiéguezUribeondo,
P Martiacute n Maria
Publication year - 2013
Publication title -
african journal of biotechnology
Language(s) - English
Resource type - Journals
ISSN - 1684-5315
DOI - 10.5897/ajb2013.12097
Subject(s) - internal transcribed spacer , biology , ribosomal dna , spacer dna , ribosomal rna , fungus , potato dextrose agar , sequence analysis , botany , agar , gene , genetics , phylogenetics , bacteria
Investigations into occurrence of fungus Aphanomyces frigidophilus in water of springs Dojlidy Gorne, Jaroszowka and Pietrasze within the town Bialystok in Podlasie Province, Poland were conducted in Winter, Spring, Summer and Autumn of the year 2005. Samples were processed in the laboratory by routine methods commonly used to isolate these organisms. Bait method with the use of hemp seeds Cannabis sativa, small pieces of snake skin Natrix natrix and exuviae of shrimp Gammarus sp. as bait was applied to isolate the fungus Aphanomyces frigidophilus from the springs. The isolate was maintained on Potato Dextrose Agar PDA and stored in the culture collection of the Real Jardin Botanico CSIC Madrid, Spain. Aphanomyces frigidophilus occurred in 18 [(6)16.7%) in Winter, 3(8.3%) in Spring, 2(5.6%) in Summer, 7(19.4%) in Autumn, 2005] of the examined water samples. In Spring Dojlidy Gorne it was very common and was found in all research seasons. The isolate was characterized by studding sequencing the internal transcribed spacer of nuclear DNA (ITS1+5.8S+ITS2). The results indicated the sequence comparisons of two ITS nuclear DNA for species identification: Aphanomyces frigidophilus 18S ribosomal RNA gene, partial sequence, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence and 28S ribosomal RNA gene, partial sequence. The results indicated the sequence of our isolate corresponded to the species Aphanomyces frigidophilus (AY647192, version AY647192.1; GI: 48766837).
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