Evaluating phylogenetic relationships in the Lilium family using the ITS marker
Author(s) -
Sina Ghanbari,
Barat Ali Fakheri,
Mohammad Reza Naghavi,
Nafiseh Mahdinezhad
Publication year - 2018
Publication title -
journal of plant biotechnology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.246
H-Index - 8
eISSN - 1598-6365
pISSN - 1229-2818
DOI - 10.5010/jpb.2018.45.3.236
Subject(s) - biology , phylogenetic tree , lilium , phylogenetic relationship , evolutionary biology , genetics , computational biology , botany , gene
Lilium is a perennial bulbous plant belonging to the liriotypes genus. Our aim was to study the phylogenetic relationships of the Lilium family. Two varieties of Lilium ledebourii, 44 varieties of the gene bank, and one variety from the Tulipa family served as the out group. In order to study the diversity between lilium masses, ITS regions were used to design the marker. The results showed that the guanine base is the most abundant nucleotide. Relatively high conservation was observed in the ITS regions of the populations (0.653). Phylogenetic analysis showed that sargentiae and hybrid varieties are older than other varieties of the Lilium family. Also, the location of L. ledebourii varieties (Damash and Namin) was identified in a phylogenetic tree by using the ITS marker. Overall, our research showed that ITS molecular markers are very suitable for phylogenetic studies in the Lilium family.
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