Mining Gene Ontology Data with AGENDA | Zendy

Guvanch Ovezmyradov | Zendy; Qianhao Lu | Zendy; Martin C. Göpfert | Zendy

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Mining Gene Ontology Data with AGENDA

Author(s) -

Guvanch Ovezmyradov,

Qianhao Lu,

Martin C. Göpfert

Publication year - 2012

Publication title -

bioinformatics and biology insights

Language(s) - English

Resource type - Journals

SCImago Journal Rank - 0.556

H-Index - 23

ISSN - 1177-9322

DOI - 10.4137/bbi.s9101

Subject(s) - ontology , world wide web , computer science , gene ontology , download , data science , information retrieval , controlled vocabulary , gene , biology , philosophy , gene expression , biochemistry , epistemology

The Gene Ontology (GO) initiative is a collaborative effort that uses controlled vocabularies for annotating genetic information. We here present AGENDA (Application for mining Gene Ontology Data), a novel web-based tool for accessing the GO database. AGENDA allows the user to simultaneously retrieve and compare gene lists linked to different GO terms in diverse species using batch queries, facilitating comparative approaches to genetic information. The web-based application offers diverse search options and allows the user to bookmark, visualize, and download the results. AGENDA is an open source web-based application that is freely available for non-commercial use at the project homepage. URL: http://sourceforge.net/projects/bioagenda.

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