The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes | Zendy

Konstantinos Mavromatis | Zendy; Natalia Ivanova | Zendy; I-Min A. Chen | Zendy; Ernest Szeto | Zendy; Victor Markowitz | Zendy; Nikos C. Kyrpides | Zendy

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The DOE-JGI Standard Operating Procedure for the Annotations of Microbial Genomes

Author(s) -

Konstantinos Mavromatis,

Natalia Ivanova,

I-Min A. Chen,

Ernest Szeto,

Victor Markowitz,

Nikos C. Kyrpides

Publication year - 2009

Publication title -

standards in genomic sciences

Language(s) - English

Resource type - Journals

ISSN - 1944-3277

DOI - 10.4056/sigs.632

Subject(s) - annotation , biology , contig , genome , computational biology , gene annotation , gene , genome project , genetics

The DOE-JGI Microbial Annotation Pipeline (DOE-JGI MAP) supports gene prediction and/or functional annotation of microbial genomes towards comparative analysis with the Integrated Microbial Genome (IMG) system. DOE-JGI MAP annotation is applied on nucleotide sequence datasets included in the IMG-ER (Expert Review) version of IMG via the IMG ER submission site. Users can submit the sequence datasets consisting of one or more contigs in a multi-fasta file. DOE-JGI MAP annotation includes prediction of protein coding and RNA genes, as well as repeats and assignment of product names to these genes.

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