Complete genome sequence of Atopobium parvulum type strain (IPP 1246T) | Zendy

Alex Copeland | Zendy; Johannes Sikorski | Zendy; Alla Lapidus | Zendy; Matt Nolan | Zendy; Tijana Glavina Del Rio | Zendy; Susan Lucas | Zendy; Feng Chen | Zendy; Hope Tice | Zendy; Sam Pitluck | Zendy; JanFang Cheng | Zendy; Rüdiger Pukall | Zendy; Olga Chertkov | Zendy; Thomas Brettin | Zendy; Cliff Han | Zendy; John C. Detter | Zendy; Cheryl R. Kuske | Zendy; David Bruce | Zendy; Lynne Goodwin | Zendy; Natalia Ivanova | Zendy; Konstantinos Mavromatis | Zendy; Natalia Mikhailova | Zendy; Amy Chen | Zendy; Krishna Palaniappan | Zendy; Patrick Chain | Zendy; Manfred Rohde | Zendy; Markus Göker | Zendy; Jim Bristow | Zendy; Jonathan A. Eisen | Zendy; Victor Markowitz | Zendy; Philip Hugenholtz | Zendy; Nikos C. Kyrpides | Zendy; HansPeter Klenk | Zendy

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Complete genome sequence of Atopobium parvulum type strain (IPP 1246T)

Author(s) -

Alex Copeland,

Johannes Sikorski,

Alla Lapidus,

Matt Nolan,

Tijana Glavina Del Rio,

Susan Lucas,

Feng Chen,

Hope Tice,

Sam Pitluck,

JanFang Cheng,

Rüdiger Pukall,

Olga Chertkov,

Thomas Brettin,

Cliff Han,

John C. Detter,

Cheryl R. Kuske,

David Bruce,

Lynne Goodwin,

Natalia Ivanova,

Konstantinos Mavromatis,

Natalia Mikhailova,

Amy Chen,

Krishna Palaniappan,

Patrick Chain,

Manfred Rohde,

Markus Göker,

Jim Bristow,

Jonathan A. Eisen,

Victor Markowitz,

Philip Hugenholtz,

Nikos C. Kyrpides,

HansPeter Klenk

Publication year - 2009

Publication title -

standards in genomic sciences

Language(s) - English

Resource type - Journals

ISSN - 1944-3277

DOI - 10.4056/sigs.29547

Subject(s) - biology , genome , genetics , whole genome sequencing , replicon , gene

Atopobium parvulum (Weinberg et al. 1937) Collins and Wallbanks 1993 comb. nov. is the type strain of the species and belongs to the genomically yet unstudied Atopobium/Olsenella branch of the family Coriobacteriaceae. The species A. parvulum is of interest because its members are frequently isolated from the human oral cavity and are found to be associated with halitosis (oral malodor) but not with periodontitis. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first complete genome sequence of the genus Atopobium, and the 1,543,805 bp long single replicon genome with its 1369 protein-coding and 49 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.

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