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Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4T)
Author(s) -
Iain Anderson,
Brittany Held,
Alla Lapidus,
Matt Nolan,
Susan Lucas,
Hope Tice,
Tijana Glavina Del Rio,
JanFang Cheng,
Cliff Han,
Roxanne Tapia,
Lynne Goodwin,
Sam Pitluck,
Konstantinos Liolios,
Konstantinos Mavromatis,
Ioanna Pagani,
Natalia Ivanova,
Natalia Mikhailova,
Amrita Pati,
Amy Chen,
Krishna Palaniappan,
Miriam Land,
Evelyne-Marie Brambilla,
Manfred Rohde,
Stefan Spring,
Markus Göker,
John C. Detter,
Tanja Woyke,
James Bristow,
Jonathan A. Eisen,
Victor Markowitz,
Philip Hugenholtz,
HansPeter Klenk,
Nikos C. Kyrpides
Publication year - 2012
Publication title -
standards in genomic sciences
Language(s) - English
Resource type - Journals
ISSN - 1944-3277
DOI - 10.4056/sigs.2746047
Subject(s) - biology , archaea , genome , whole genome sequencing , gene , genetics , bacteria , strain (injury) , acidobacteria , organism , actinobacteria , 16s ribosomal rna , anatomy
Holophaga foetida Liesack et al. 1995 is a member of the phylum Acidobacteria and is of interest for its ability to anaerobically degrade aromatic compounds and for its production of volatile sulfur compounds through a unique pathway. The genome of H. foetida strain TMBS4(T) is the first to be sequenced for a representative of the class Holophagae. Here we describe the features of this organism, together with the complete genome sequence (improved high quality draft), and annotation. The 4,127,237 bp long chromosome with its 3,615 protein-coding and 57 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

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