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A Method to Study <em>de novo</em> Formation of Chromatin Domains
Author(s) -
Ozgur Oksuz,
Danny Reinberg
Publication year - 2019
Publication title -
journal of visualized experiments
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.596
H-Index - 91
ISSN - 1940-087X
DOI - 10.3791/60039
Subject(s) - chromatin , computational biology , chia pet , function (biology) , microbiology and biotechnology , prc2 , scaffold/matrix attachment region , biology , histone modifying enzymes , chromatin remodeling , bivalent chromatin , polycomb group proteins , dna , genetics , gene , ezh2 , transcription factor , repressor
The organization and structure of chromatin domains are unique to individual cell lineages. Their misregulation might lead to a loss in cellular identity and/or disease. Despite tremendous efforts, our understanding of the formation and propagation of chromatin domains is still limited. Chromatin domains have been studied under steady-state conditions, which are not conducive to following the initial events during their establishment. Here, we present a method to inducibly reconstruct chromatin domains and follow their re-formation as a function of time. Although, first applied to the case of PRC2-mediated repressive chromatin domain formation, it could be easily adapted to other chromatin domains. The modification of and/or the combination of this method with genomics and imaging technologies will provide invaluable tools to study the establishment of chromatin domains in great detail. We believe that this method will revolutionize our understanding of how chromatin domains form and interact with each other.

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