Multi-ethnic SULT1A1 cOpy Number Profiling with Multiplex Ligation-Dependent Probe Amplification
Author(s) -
Raymon Vijzelaar,
Mariana Rodrigues Botton,
Lisette Stolk,
Suparna Martis,
Robert J. Desnick,
Stuart A. Scott
Publication year - 2018
Publication title -
pharmacogenomics
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.541
H-Index - 91
eISSN - 1744-8042
pISSN - 1462-2416
DOI - 10.2217/pgs-2018-0047
Subject(s) - multiplex , multiplex ligation dependent probe amplification , copy number variation , ethnic group , genetics , microbiology and biotechnology , medicine , biology , gene , genome , sociology , anthropology , exon
Aim: To develop a SULT1A1 multiplex ligation-dependent probe amplification assay and to investigate multi-ethnic copy number variant frequencies. Methods: A novel multiplex ligation-dependent probe amplification assay was developed and tested on 472 African–American, Asian, Caucasian, Hispanic and Ashkenazi Jewish individuals. Results: The frequencies of atypical total copy number (i.e., greater or less than two) were 38.7% for Hispanics, 38.9% for Ashkenazi Jewish, 43.2% for Caucasians, 53.6% for Asians and 64.1% for African–Americans. Heterozygous SULT1A1 deletion carriers (slow sulfators) were most common among Caucasians (8.4%), whereas African–Americans had the highest frequencies of three or more copies (rapid sulfators; 60.9%). Conclusion: Different ethnic and racial populations have varying degrees of SULT1A1-mediated sulfation activity, which warrants further research and that may have utility for drug response prediction among SULT1A1-metabolized medications.
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