Phylogenetic Patterns of Genus Megophrys (Anura: Megophryidae) from Java and Sumatra
Author(s) -
Nia Kurniawan,
Aminuddin Affandi,
Erintha Eka Wardani,
Indah Nur Chomsy,
Anggun Sausan Firdaus,
Agung Sih Kurnianto
Publication year - 2017
Publication title -
the journal of experimental life sciences
Language(s) - English
Resource type - Journals
eISSN - 2338-1655
pISSN - 2087-2852
DOI - 10.21776/ub.jels.2017.007.02.03
Subject(s) - subclade , clade , biology , phylogenetic tree , paraphyly , genus , zoology , fauna , ecology , gene , genetics
The emergence of Java and Sumatra islands at the end of Miocene, has impact to the diversity of fauna that living in the islands. Amphibia, as one of a genetic information series, can be used as a good phylogenetic comparison. Genus Megophrys (Anura: Megophryidae), is a member of amphibians that live isolated at an altitude of 1000 ASL (Above Sea Level) or more. The purpose of this research is to analyze the phylogenetic patterns of genus Megophrys in Java and Sumatra based on the analysis of 16s rRNA gene. We also analyzed the zoogeography to understand the history of relationship and the establishment of these islands. We took samples on 12 localities: 10 areas of Sumatra and 2 areas of Java. We used Qiamp Blood and Tissue Kit to extract the DNA from tissues. Qualitative analysis of DNA was done by running electrophoresis on 1% agarose gel. Qualitative analysis of DNA was done by running electrophoresis on 1% agarose gel. Results show that Clade A has 2 subclasses: I and II. Subclade I consists of Sumatran specimens, whereas subclade II consists of Javanese specimens. Subclaude I and II have paraphyletic connections. Clade B classified as politomy clade consists of Megophrys sp. from West Pasaman, Megophry s sp. from West Sumatra and Megophrys sp. from Pasawaran, Lampung. The result shows that Megophrys sp. of subclade I (clade A) and clade B, belongs to the same group, both of them were originated from Sumatra. Megophrys sp. subclade I (clade A) originated from Tanggamus (Lampung) and West Lampung (Lampung) separated with 2 species of Megophrys sp. of clade B originated from Pasawaran (Lampung). Keywords: 16s rRNA, Java, Megohprys , Sumatra, zoogeography
Accelerating Research
Robert Robinson Avenue,
Oxford Science Park, Oxford
OX4 4GP, United Kingdom
Address
John Eccles HouseRobert Robinson Avenue,
Oxford Science Park, Oxford
OX4 4GP, United Kingdom