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Soil salinization is a key problem limiting the sustainable development of agriculture in arid areas. To explore the quantitative influence of irrigation on soil salinity and groundwater quality, spatial variability of salt at different soil depths and total dissolved solids in groundwater before and after irrigation was analysed in the Hetao Irrigation District, China. The spatial variability of soil salinity before and after irrigation was moderate, with high coefficients of variation observed in shallow soil. After irrigation, amounts of salt were transferred into the groundwater, leading to the deterioration of groundwater quality, the average salt flux through each interface was −153.66, 169.12, 130.13 and 318.48 g/m2, for 20, 50, 100 and 150 cm soil depths, respectively. All salt moved downward vertically except for 0–20 cm soil layer, and the average soil salt flux of shallow layers was significantly lower than that of deep layers. Compared soils of different depths and land types, salt discharge occurred in cultivated land, while salt accumulation occurred in shallow soil in wasteland after irrigation. Irrigation could help remove salt from cultivated land and deeper soil; however, it had almost no effect on shallow soil of other land uses.

Evaluating the impact of flood irrigation on spatial variabilities of soil salinity and groundwater quality in an arid irrigated region