Cleaning up Western blot signals from immunoprecipitated samples using alternative detection methods

High background signal is a common problem experienced when detecting proteins isolated through immunoprecipitation (IP) by Western blotting (WB). The most frequent cause of high background is signal interference from the heavy and light chain fragments of the denatured immunoprecipitating (or capture) antibody ' by-products of IP labeled by species-specific secondary antibodies at the WB stage. Here we comment on alternative methods for the detection of immunoprecipitated proteins by WB that avoid labeling of the heavy and light chain to varying extents. Certain methods have been described elsewhere (1), however, their use remains less widespread than traditional detection methods despite offering the researcher considerable advantages.