Prediction of biologically important features related to intron retention events based on machine learning algorithms
Author(s) -
Felipe E. Ciamponi,
Katlin B. Massirer,
Michael Lovci
Publication year - 2016
Publication title -
anais do congresso de iniciação científica da unicamp
Language(s) - English
Resource type - Conference proceedings
ISSN - 2447-5114
DOI - 10.19146/pibic-2016-52015
Subject(s) - computer science , machine learning , artificial intelligence , intron , algorithm , chemistry , gene , biochemistry
The retention of introns represents a class of alternative splicing (AS) events frequently associated with diseases. Despite the recent development of many AS identification tools, most of the tools do not consider their relationship to relevant biological features. We developed a package capable of accessing many features to AS events and evaluated association between events. We identified that retained introns and nearby exons have lower GC content then their nonretained counterparts.
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