Epigenome-wide gene–age interaction analysis reveals reversed effects of PRODH DNA methylation on survival between young and elderly early-stage NSCLC patients
Author(s) -
Chao Chen,
Yongyue Wei,
Liangmin Wei,
Jiajin Chen,
Xin Chen,
Xuesi Dong,
Jieyu He,
Lijuan Lin,
Ying Zhu,
Hui Huang,
Dongfang You,
Linjing Lai,
Sipeng Shen,
Weiwei Duan,
Li Su,
Andrea T. Shafer,
Thomas Fleischer,
Maria Moksnes Bjaanæs,
Anna Karlsson,
Maria Planck,
Rui Wang,
Johan Staaf,
Åslaug Helland,
Manel Esteller,
Ruyang Zhang,
Feng Chen,
David C. Christiani
Publication year - 2020
Publication title -
aging
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.473
H-Index - 90
ISSN - 1945-4589
DOI - 10.18632/aging.103284
Subject(s) - epigenome , dna methylation , chen , methylation , stage (stratigraphy) , biology , genetics , gene , oncology , microbiology and biotechnology , medicine , gene expression , paleontology
DNA methylation changes during aging, but it remains unclear whether the effect of DNA methylation on lung cancer survival varies with age. Such an effect could decrease prediction accuracy and treatment efficacy. We performed a methylation-age interaction analysis using 1,230 early-stage lung adenocarcinoma patients from five cohorts. A Cox proportional hazards model was used to investigate lung adenocarcinoma and squamous cell carcinoma patients for methylation-age interactions, which were further confirmed in a validation phase. We identified one adenocarcinoma-specific CpG probe, cg14326354 PRODH , with effects significantly modified by age ( HR interaction = 0.989; 95% CI: 0.986-0.994; P = 9.18×10-7). The effect of low methylation was reversed for young and elderly patients categorized by the boundary of 95% CI standard ( HR young = 2.44; 95% CI: 1.26-4.72; P = 8.34×10-3; HR elderly = 0.58; 95% CI: 0.42-0.82; P = 1.67×10-3). Moreover, there was an antagonistic interaction between low cg14326354 PRODH methylation and elderly age ( HR interaction = 0.21; 95% CI: 0.11-0.40; P = 2.20×10-6). In summary, low methylation of cg14326354PRODH might benefit survival of elderly lung adenocarcinoma patients, providing new insight to age-specific prediction and potential drug targeting.
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