Application of committee kNN classifiers for gene expression profile classification
Author(s) -
Manik Dhawan,
Sudarshan Selvaraja,
Zhong-Hui Duan
Publication year - 2010
Publication title -
international journal of bioinformatics research and applications
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 0.109
H-Index - 16
eISSN - 1744-5493
pISSN - 1744-5485
DOI - 10.1504/ijbra.2010.035998
Subject(s) - preprocessor , artificial intelligence , classifier (uml) , pattern recognition (psychology) , random subspace method , computer science , data mining , k nearest neighbors algorithm , microarray analysis techniques , statistical classification , gene , gene expression , biology , genetics
In this study, we develop a two-class classification system based on a committee of k-Nearest Neighbour (kNN) classifiers. The system includes a sequence of simple data preprocessing steps. Each committee consists of 5 kNN classifiers of different architectures. Each classifier on the committee takes in a different set of features. The classification system is then applied to a set of microarray gene expression profiles from leukaemia patients. We show that the system can be effectively used for classifying microarray gene expression data. The results demonstrate the committee approach consistently outperforms individual kNN classifiers in terms of both classification accuracy and stability.
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